3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11545

Details:

PFam ID : PF11545

PFam Domain Description : Cell surface heme-binding protein Shp

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 20

Average sequence length: 140.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11545	Q8NZK7_STRP8_29_180	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11545	Q8NZK7_STRP8_29_180	100

Sequence based PCA Plot of the family - PF11545 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=125 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay