3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11543

Details:

PFam ID : PF11543

PFam Domain Description : Nuclear pore localisation protein NPL4

Number of Sequence in 50% Dataset : 42

Number of Sequence in Full Dataset : 85

Average sequence length: 77.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11543	B9MXC6_POPTR_2_76	78.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11543	E1F121_GIAIA_1_83	100

Sequence based PCA Plot of the family - PF11543 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=26 Length=8
Motif2 Start=8 Length=17
Motif3 Start=71 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay