3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11540

Details:

PFam ID : PF11540

PFam Domain Description : Cytoplasmic dynein 1 intermediate chain 2

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 30

Average sequence length: 31

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11540	B7Q0V5_IXOSC_2_25	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11540	F0ZN11_DICPU_87_118	100

Sequence based PCA Plot of the family - PF11540 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay