3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11527

Details:

PFam ID : PF11527

PFam Domain Description : The ARF-like 2 binding protein BART

Number of Sequence in 50% Dataset : 59

Number of Sequence in Full Dataset : 112

Average sequence length: 114.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11527	D7FPD1_ECTSI_34_162	87.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11527	D7FPD1_ECTSI_34_162	100

Sequence based PCA Plot of the family - PF11527 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=29 Length=8
Motif2 Start=20 Length=8
Motif3 Start=1 Length=8
Motif4 Start=11 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay