3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11522

Details:

PFam ID : PF11522

PFam Domain Description : Yeast phosphatidylinositol-4-OH kinase Pik1

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 45

Average sequence length: 48.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11522	B3S9K5_TRIAD_307_394	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11522	A7EWK2_SCLS1_45_92	100

Sequence based PCA Plot of the family - PF11522 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=28 Length=18
Motif2 Start=12 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay