3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11517

Details:

PFam ID : PF11517

PFam Domain Description : Nuclear abundant poly(A) RNA-bind protein 2 (Nab2)

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 11

Average sequence length: 89.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11517	B3RY36_TRIAD_2497_2572	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11517	F2QQ34_PICPA_5_134	100

Sequence based PCA Plot of the family - PF11517 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay