3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11513

Details:

PFam ID : PF11513

PFam Domain Description : Thermoplasma acidophilum protein TA0956

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 4

Average sequence length: 82.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11513	A6EP40_9BACT_4_78	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11513	Q6KZ56_PICTO_1_111	100

Sequence based PCA Plot of the family - PF11513 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay