3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11512

Details:

PFam ID : PF11512

PFam Domain Description : Agrobacterium tumefaciens protein Atu4866

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 51

Average sequence length: 76.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11512	A6EP40_9BACT_4_78	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11512	A6EP40_9BACT_4_78	98

Sequence based PCA Plot of the family - PF11512 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=51 Length=8
Motif3 Start=25 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay