3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11498

Details:

PFam ID : PF11498

PFam Domain Description : Transcriptional activator LAG-3

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 7

Average sequence length: 253.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11498	E7R0T3_PICAD_27_110	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11498	A8X9K8_CAEBR_1_408	83

Sequence based PCA Plot of the family - PF11498 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=13 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay