3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11496

Details:

PFam ID : PF11496

PFam Domain Description : Class II histone deacetylase complex subunits 2 and 3

Number of Sequence in 50% Dataset : 40

Number of Sequence in Full Dataset : 70

Average sequence length: 257.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11496	E7R0T3_PICAD_27_110	58.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11496	F2QRV9_PICPA_28_341	100

Sequence based PCA Plot of the family - PF11496 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=5 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay