3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11493

Details:

PFam ID : PF11493

PFam Domain Description : Thylakoid soluble phosphoprotein TSP9

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 19

Average sequence length: 72

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11493	A0NJ89_OENOE_30_197	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11493	B8LM75_PICSI_15_98	94.4

Sequence based PCA Plot of the family - PF11493 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=29 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay