3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11490

Details:

PFam ID : PF11490

PFam Domain Description : DNA polymerase III polC-type N-terminus

Number of Sequence in 50% Dataset : 146

Number of Sequence in Full Dataset : 261

Average sequence length: 173.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11490	A0NJ89_OENOE_30_197	51.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11490	B0THP5_HELMI_35_205	99.6

Sequence based PCA Plot of the family - PF11490 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=23 Length=8
Motif2 Start=1 Length=8
Motif3 Start=14 Length=8
Motif4 Start=118 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay