3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11480

Details:

PFam ID : PF11480

PFam Domain Description : Colicin-E5 Imm protein

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 12

Average sequence length: 70.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11480	B7LIF7_ECO81_5_75	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11480	Q02S28_PSEAB_25_110	100

Sequence based PCA Plot of the family - PF11480 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay