3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11468

Details:

PFam ID : PF11468

PFam Domain Description : Aromatic prenyltransferase Orf2

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 18

Average sequence length: 276.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11468	A7EVV6_SCLS1_12_309	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11468	Q4R2T2_STRC1_5_307	100

Sequence based PCA Plot of the family - PF11468 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay