3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11458

Details:

PFam ID : PF11458

PFam Domain Description : Membrane-integrating protein Mistic

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 6

Average sequence length: 70.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11458	Q5M6A0_STRT2_1_71	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11458	A6CLW8_9BACI_1_85	100

Sequence based PCA Plot of the family - PF11458 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay