3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11443

Details:

PFam ID : PF11443

PFam Domain Description : Domain of unknown function (DUF2828)

Number of Sequence in 50% Dataset : 90

Number of Sequence in Full Dataset : 170

Average sequence length: 330.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11443	B9FLC7_ORYSJ_184_261	88.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11443	C5F035_9HELI_6_141	100

Sequence based PCA Plot of the family - PF11443 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=58 Length=8
Motif2 Start=218 Length=8
Motif3 Start=332 Length=8
Motif4 Start=20 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay