3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11440

Details:

PFam ID : PF11440

PFam Domain Description : DNA alpha-glucosyltransferase

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 4

Average sequence length: 202.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11440	Q55CE2_DICDI_195_294	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11440	Q9ZXI3_BPAR1_1_355	100

Sequence based PCA Plot of the family - PF11440 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay