3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11439

Details:

PFam ID : PF11439

PFam Domain Description : Type III secretion system filament chaperone CesA

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 6

Average sequence length: 73.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11439	A7VMU9_CIOIN_37_137	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11439	E7JK22_ECOLX_1_71	100

Sequence based PCA Plot of the family - PF11439 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay