3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11438

Details:

PFam ID : PF11438

PFam Domain Description : 36-mer N-terminal peptide of the N protein (N36)

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 4

Average sequence length: 26.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11438	A7VMU9_CIOIN_37_137	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11438	D3R8Z0_KLEVT_2_36	100

Sequence based PCA Plot of the family - PF11438 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay