3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11431

Details:

PFam ID : PF11431

PFam Domain Description : Membrane transport protein MerF

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 31

Average sequence length: 43.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11431	A1U8G6_MARAV_1_39	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11431	A1U8G6_MARAV_1_39	93.3

Sequence based PCA Plot of the family - PF11431 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay