3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11429

Details:

PFam ID : PF11429

PFam Domain Description : Colicin D

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 20

Average sequence length: 80.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11429	A1DD43_NEOFI_14_104	14.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11429	E3ZD46_LISIV_56_142	100

Sequence based PCA Plot of the family - PF11429 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=35 Length=8
Motif2 Start=26 Length=8
Motif3 Start=17 Length=8
Motif4 Start=8 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay