3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11417

Details:

PFam ID : PF11417

PFam Domain Description : Loader and inhibitor of phage G40P

Number of Sequence in 50% Dataset : 23

Number of Sequence in Full Dataset : 24

Average sequence length: 64

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11417	C2RX14_BACCE_1_41	95.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11417	E4RNN5_HALSL_1_74	100

Sequence based PCA Plot of the family - PF11417 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=30
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay