3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11416

Details:

PFam ID : PF11416

PFam Domain Description : Integral membrane protein Sed5p

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 21

Average sequence length: 26.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11416	B0WDA2_CULQU_343_398	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11416	C5DGC7_LACTC_1_22	100

Sequence based PCA Plot of the family - PF11416 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay