3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11413

Details:

PFam ID : PF11413

PFam Domain Description : Hypoxia-inducible factor-1

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 47

Average sequence length: 33.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11413	Q23RI5_TETTH_878_908	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11413	F1QNB9_DANRE_543_570	100

Sequence based PCA Plot of the family - PF11413 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay