3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11412

Details:

PFam ID : PF11412

PFam Domain Description : Disulphide bond corrector protein DsbC

Number of Sequence in 50% Dataset : 249

Number of Sequence in Full Dataset : 863

Average sequence length: 119.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11412	Q23RI5_TETTH_878_908	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11412	A0Y8C5_9GAMM_51_196	99.7

Sequence based PCA Plot of the family - PF11412 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=39 Length=8
Motif4 Start=126 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay