3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11411

Details:

PFam ID : PF11411

PFam Domain Description : DNA ligase IV

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 23

Average sequence length: 33.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11411	Q23RI5_TETTH_878_908	28.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11411	A7SKL4_NEMVE_736_771	100

Sequence based PCA Plot of the family - PF11411 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay