3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11410

Details:

PFam ID : PF11410

PFam Domain Description : Antifungal peptide

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 24

Average sequence length: 31.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11410	B5VPV9_YEAS6_273_314	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11410	C9WIX2_BEMTA_18_40	95.6

Sequence based PCA Plot of the family - PF11410 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay