3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11405

Details:

PFam ID : PF11405

PFam Domain Description : Bromelain inhibitor VI

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 2

Average sequence length: 20.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11405	E6RI84_PSEU9_16_124	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11405	IBRO_ANACO_36_76	100

Sequence based PCA Plot of the family - PF11405 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay