3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11397

Details:

PFam ID : PF11397

PFam Domain Description : Glycosyltransferase (GlcNAc)

Number of Sequence in 50% Dataset : 68

Number of Sequence in Full Dataset : 120

Average sequence length: 254.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11397	A8JGQ9_CHLRE_1_164	83.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11397	E9AC99_LEIMA_502_890	100

Sequence based PCA Plot of the family - PF11397 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=16 Length=8
Motif2 Start=92 Length=8
Motif3 Start=112 Length=8
Motif4 Start=7 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay