3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11390

Details:

PFam ID : PF11390

PFam Domain Description : NADH-dependant formate dehydrogenase delta subunit FdsD

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 126

Average sequence length: 60.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11390	A6VXL6_MARMS_8_69	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11390	A6VXL6_MARMS_8_69	100

Sequence based PCA Plot of the family - PF11390 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=29 Length=20
Motif2 Start=2 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay