3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11357

Details:

PFam ID : PF11357

PFam Domain Description : Cell cycle regulatory protein

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 38

Average sequence length: 115.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11357	SPDL1_HUMAN_336_398	63.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11357	Q54VF8_DICDI_151_294	100

Sequence based PCA Plot of the family - PF11357 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=112 Length=8
Motif4 Start=135 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay