3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11315

Details:

PFam ID : PF11315

PFam Domain Description : Mediator complex subunit 30

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 30

Average sequence length: 134.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11315	B7QMS6_IXOSC_1_101	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11315	A7RQ73_NEMVE_47_191	100

Sequence based PCA Plot of the family - PF11315 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=27 Length=18
Motif2 Start=18 Length=8
Motif3 Start=9 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay