3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11308

Details:

PFam ID : PF11308

PFam Domain Description : Glycosyl hydrolases related to GH101 family

Number of Sequence in 50% Dataset : 26

Number of Sequence in Full Dataset : 63

Average sequence length: 303.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11308	F0RBZ2_CELLC_355_635	80

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11308	D1NAT4_9BACT_337_631	100

Sequence based PCA Plot of the family - PF11308 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=9 Length=8
Motif2 Start=188 Length=8
Motif3 Start=52 Length=8
Motif4 Start=244 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay