3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11277

Details:

PFam ID : PF11277

PFam Domain Description : Mediator complex subunit 24 N-terminal

Number of Sequence in 50% Dataset : 33

Number of Sequence in Full Dataset : 44

Average sequence length: 491.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11277	B0XHQ6_CULQU_1_289	12.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11277	B7PZP3_IXOSC_4_994	100

Sequence based PCA Plot of the family - PF11277 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay