3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11265

Details:

PFam ID : PF11265

PFam Domain Description : Mediator complex subunit 25 von Willebrand factor type A

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 47

Average sequence length: 167.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11265	Q54L49_DICDI_137_326	21.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11265	E4XYA1_OIKDI_1_211	100

Sequence based PCA Plot of the family - PF11265 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=42 Length=8
Motif4 Start=76 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay