3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11264

Details:

PFam ID : PF11264

PFam Domain Description : Thylakoid formation protein

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 77

Average sequence length: 198.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11264	A7IW59_PBCVN_51_247	12.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11264	THF1_GLOVI_6_224	100

Sequence based PCA Plot of the family - PF11264 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=55 Length=8
Motif2 Start=16 Length=8
Motif3 Start=27 Length=8
Motif4 Start=132 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay