3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11263

Details:

PFam ID : PF11263

PFam Domain Description : Borrelia burgdorferi attachment protein P66

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 18

Average sequence length: 159.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11263	Q6UR24_9SPIO_1_115	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11263	Q6UR24_9SPIO_1_115	100

Sequence based PCA Plot of the family - PF11263 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=99 Length=8
Motif4 Start=46 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay