3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11262

Details:

PFam ID : PF11262

PFam Domain Description : Transcription factor/nuclear export subunit protein 2

Number of Sequence in 50% Dataset : 77

Number of Sequence in Full Dataset : 140

Average sequence length: 259.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11262	B8C4I1_THAPS_1197_1536	88.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11262	A2EPD0_TRIVA_623_702	100

Sequence based PCA Plot of the family - PF11262 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=14 Length=17
Motif2 Start=165 Length=8
Motif3 Start=121 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay