3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11261

Details:

PFam ID : PF11261

PFam Domain Description : Interferon regulatory factor 2-binding protein zinc finger

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 17

Average sequence length: 51.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11261	E4WQ09_OIKDI_17_75	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11261	E4WQ09_OIKDI_17_75	100

Sequence based PCA Plot of the family - PF11261 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=6 Length=40

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay