3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11244

Details:

PFam ID : PF11244

PFam Domain Description : Mediator complex subunit 25 C-terminal NR box-containing

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 11

Average sequence length: 66.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11244	MED25_XENLA_712_801	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11244	E5FIX9_9CAUD_1_92	100

Sequence based PCA Plot of the family - PF11244 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=41 Length=8
Motif2 Start=30 Length=8
Motif3 Start=2 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay