3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11235

Details:

PFam ID : PF11235

PFam Domain Description : Mediator complex subunit 25 synapsin 1

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 8

Average sequence length: 142.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11235	MED25_XENTR_223_400	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11235	MED25_XENTR_223_400	100

Sequence based PCA Plot of the family - PF11235 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=40 Length=8
Motif2 Start=167 Length=11
Motif3 Start=10 Length=8
Motif4 Start=22 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay