3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11232

Details:

PFam ID : PF11232

PFam Domain Description : Mediator complex subunit 25 PTOV activation and synapsin 2

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 28

Average sequence length: 138.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11232	B3P771_DROER_208_358	12.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11232	B3P771_DROER_208_358	100

Sequence based PCA Plot of the family - PF11232 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=28
Motif2 Start=134 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay