3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11182

Details:

PFam ID : PF11182

PFam Domain Description : Alginate O-acetyl transferase AlgF

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 32

Average sequence length: 160.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11182	B1YKX7_EXIS2_2_114	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11182	D5RNY2_9PROT_13_207	93.5

Sequence based PCA Plot of the family - PF11182 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=19 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay