3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11181

Details:

PFam ID : PF11181

PFam Domain Description : Heat induced stress protein YflT

Number of Sequence in 50% Dataset : 55

Number of Sequence in Full Dataset : 107

Average sequence length: 96.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11181	B1YKX7_EXIS2_2_114	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11181	D5DJ07_BACMD_4_124	100

Sequence based PCA Plot of the family - PF11181 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay