3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11155

Details:

PFam ID : PF11155

PFam Domain Description : Domain of unknown function (DUF2935)

Number of Sequence in 50% Dataset : 49

Number of Sequence in Full Dataset : 155

Average sequence length: 122.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11155	B2V397_CLOBA_2_61	85.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11155	A1HMR5_9FIRM_135_276	100

Sequence based PCA Plot of the family - PF11155 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=34 Length=8
Motif2 Start=25 Length=8
Motif3 Start=1 Length=14
Motif4 Start=16 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay