3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11130

Details:

PFam ID : PF11130

PFam Domain Description : F pilus assembly Type-IV secretion system for plasmid transfer

Number of Sequence in 50% Dataset : 87

Number of Sequence in Full Dataset : 193

Average sequence length: 238.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11130	B2VB11_ERWT9_32_287	77.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11130	B2I3Z2_ACIBC_45_325	100

Sequence based PCA Plot of the family - PF11130 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=32 Length=8
Motif2 Start=23 Length=8
Motif3 Start=1 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay