3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11114

Details:

PFam ID : PF11114

PFam Domain Description : Minor capsid protein

Number of Sequence in 50% Dataset : 26

Number of Sequence in Full Dataset : 54

Average sequence length: 106.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11114	E3GF40_EUBLK_3_87	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11114	F2JQ09_9FIRM_1_138	100

Sequence based PCA Plot of the family - PF11114 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=65 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay