3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11111

Details:

PFam ID : PF11111

PFam Domain Description : Centromere protein M (CENP-M)

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 20

Average sequence length: 151.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11111	B1AHQ8_HUMAN_1_72	42.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11111	C3Z7G6_BRAFL_12_193	100

Sequence based PCA Plot of the family - PF11111 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay