3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11109

Details:

PFam ID : PF11109

PFam Domain Description : Orexigenic neuropeptide Qrfp/P518

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 10

Average sequence length: 98.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11109	GL_EHV2_29_142	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11109	OX26_RAT_1_124	100

Sequence based PCA Plot of the family - PF11109 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay