3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11106

Details:

PFam ID : PF11106

PFam Domain Description : Exopolysaccharide production protein YjbE

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 16

Average sequence length: 75.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11106	E2B4A4_9HYME_2_90	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11106	E6WLJ6_PANSA_3_89	100

Sequence based PCA Plot of the family - PF11106 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay